Echocardiographic assessment of cardiac structures, dimensions, and mechanical function in goats is poorly documented. The goal of this study was to describe normal findings, establish normal values for two-dimensional (2DE) and M-mode (MME) echocardiography, and investigate the influence of general anaesthesia. Standardized 2DE and MME recordings were obtained on 22 healthy female Saanen goats (3.7 ± 1.1 years [mean ± SD], 60.2 ± 10.6 kg) awake (standing) and during isoflurane anesthesia (sternal recumbency). Cardiac dimensions and function were assessed and compared between treatments (awake vs. anaesthetized). Color Doppler imaging and saline contrast studies served to assess abnormal blood flow patterns. Post mortem examination was performed in a subset of 12 goats. Transthoracic echocardiography was feasible in all goats. Indices of LV systolic function proved to be significantly increased during general anesthesia. The membranous and occasionally echolucent appearance of the oval fossa suggested abnormal interatrial communication in 9 goats. Color Doppler imaging and saline contrast studies proved to be inaccurate to detect interatrial shunting of blood. Post mortem examination confirmed small persistent foramen ovale in only 3 out of 7 goats, in which it had been suspected on echocardiography.