Bilayers of mycolic acids (MAs) form the outer membrane of Mycobacterium tuberculosis that has high strength and extremely low permeability for external molecules (including antibiotics). For the first time, we were able to study them using the all-atom long-term molecular dynamic simulations (from 300 ns up to 1.2 μs) in order to investigate the conformational changes and most favorable structures of the mycobacterial membranes. The structure and properties of the membranes are crucially dependent on the initial packing of the α-mycolic acid (AMA) molecules, as well as on the presence of the secondary membrane components, keto- and methoxy mycolic acids (KMAs and MMAs). In the case of AMA-based membranes, the most labile conformation is W while other types of conformations (sU as well as sZ, eU, and eZ) are much more stable. In the multicomponent membranes, the presence of the KMA and MMA components (in the W conformation) additionally stabilizes both the W and eU conformations of AMA. The membrane in which AMA prevails in the eU conformation is much thicker and, at the same time, much denser. Such a packing of the MA molecules promotes the formation of a significantly stronger outer mycobacterial membrane that should be much more resistant to the threatening external factors.

MicroRNA (miRNA) is considered today as a prospective pharmacological agent for the development of novel high-technological medicines. In order to keep its active form in the aggressive biological environment, it...

No abstract

The clusters of bare TiO 2 and TiO 2 with linked organic ligands modeling polyorganic composites used as photocatalytic materials were studied using the density functional based tight binding (DFTB) electronic structure method with three parameter sets (trans3d, tiorg, and matsci) in comparison with results of B3LYP/6-31G(d,p) calculations, semiempirical methods PM6 and PM7, and available experimental data. It was found that the highly scalable DFTB method shows results that are close to the B3LYP/6-31G(d,p) level of theory. The corrected version of the tiorg DFTB parameter set (tiorg-smooth) has better performance for the estimations of structural param

No abstract