No abstract

Characterizing the complete mitochondrial genome (mitogenome) of an organism is useful for genomic studies in taxonomy and evolution. The mitogenomic characteristics of Eucrate crenata (Decapoda: Brachyura: Goneplacidae) have never been studied. The present study decodes the first mitogenome of E. crenata by high-throughput sequencing (HTS). The length of the mitogenome is 15,597 bp, and it contains 13 protein-coding genes, 2 ribosomal RNA genes (rrnS and rrnL), and 22 transfer RNA genes. There are 14 and 23 genes observed on the heavy and light strands, respectively. E. crenata possesses a trnH-cac translocation, with the trnH-cac shifted between trnE-gaa and trnF-ttc instead of the usual location between nad5 and nad4 in decapods. Phylogenetic analyses based on the current dataset of 33 Brachyuran mitogenomes indicate that E. crenata. is closely related to Ashtoret lunaris of Matutidae. The similar codon usage and rearrangements in the two species provide evidence for their close phylogenetic relationship. Positive selection analysis showed that one residue located in cox1 was identified as a positively selected site with high BEB value (>95%), indicating that this gene was under positive selection pressure. This study is the first complete mitogenome record for the family Goneplacidae, and the results obtained may improve the understanding of the phylogeny of Goneplacidae in Brachyura.

Artificial reefs (ARs) have been advocated for and implemented as management tools for recreational fisheries, species conservation, and habitat replacement; however, the research that includes attracting marine species of floating ARs remains in its early stages. Here, two types of floating ARs were designed to evaluate the attractive effects using the occurrence rate and attracting index for six commercially important species (Lateolabrax maculatus, Liza haematocheila, Sebastes schlegelii, Acanthopagrus schlegelii, Litopenaeus vannamei, and Amphioctopus fangsiao) in the Bohai Bay of China; their combined ARs were meanwhile compared with two variants of artificial seagrass beds (SA and SB) and the traditional double-frame artificial reef (TD). All of the designed ARs were effective in attracting experimental species. The ARs with higher shelter areas (SB and TD) showed a better attracting effect. The efficiency of the ARs in attracting different species depended on their life histories. The bottom-mounted ARs were more efficient in attracting demersal species, while the floating ARs attracted epipelagic fish. In addition, the combined reefs had a better attractive effect than single ARs did. Overall, floating ARs and their combined ARs show the potential to deploy especially for attracting epipelagic fishes, although further study is needed.

A complete mitochondrial genome (mitogenome) can provide important information for gene rearrangement, molecular evolution and phylogenetic analysis. Currently, only a few mitogenomes of hermit crabs (superfamily Paguridae) in the infraorder Anomura have been reported. This study reports the first complete mitogenome of the hermit crab Diogenes edwardsii assembled using high-throughput sequencing. The mitogenome of Diogenes edwardsii is 19,858 bp in length and comprises 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. There are 28 and six genes observed on the heavy and light strands, respectively. The genome composition was highly A + T biased (72.16%), and exhibited a negative AT-skew (−0.110) and positive GC-skew (0.233). Phylogenetic analyses based on the nucleotide dataset of 16 Anomura species indicated that D. edwardsii was closest related to Clibanarius infraspinatus in the same family, Diogenidae. Positive selection analysis showed that two residues located in cox1 and cox2 were identified as positively selected sites with high BEB value (>95%), indicating that these two genes are under positive selection pressure. This is the first complete mitogenome of the genus Diogenes, and this finding helps us to represent a new genomic resource for hermit crab species and provide data for further evolutionary status of Diogenidae in Anomura.

Complete mitochondrial genome (mitogenome) can provide important information for gene rearrangement, molecular evolution and phylogenetic analysis. Currently, only a few mitogenomes of Paguridae in the infraorder Anomura have been reported. This study reports the first complete mitogenome of the hermit crab Diogenes Edwardsii assembled using high-throughput sequencing. The mitogenome of D. Edwardsii is 19,858 bp in length and comprises 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. There are 28 and 6 genes observed on the heavy and light strands, respectively. The genome composition was highly A + T biased (72.16%), and exhibited a negative AT-skew (-0.110) and positive GC-skew (0.233). The D. Edwardsii mitogenome possessed distinctive gene arrangements compared with the reported mitogenomes of the species in the same family. Phylogenetic analyses based on the nucleotide dataset of 16 Anomura species indicated that D. Edwardsii was closely related to Clibanarius infraspinatus. Positive selection analysis showed that two residues located in cox1 and cox2 were identified as positively selected sites with high BEB value (> 95%), indicating that these two genes are under positive selection pressure. This finding helps to better understand the gene rearrangements and the evolutionary status of D. Edwardsii, and provide data for further phylogenetic study of Anomura.