We consider the quantum processor based on a chain of trapped ions to propose an architecture wherein the motional degrees of freedom of trapped ions (position and momentum) could be exploited as the computational Hilbert space. We adopt a continuous-variables approach to develop a toolbox of quantum operations to manipulate one or two vibrational modes at a time. Together with the intrinsic non-linearity of the qubit degree of freedom, employed to mediate the interaction between modes, arbitrary manipulation and readout of the ionic wave function could be achieved.