Permo-Carboniferous oil deposit of the Usinskoye field is characterized by an extremely complex type of the void space with intense cross-sectional distribution of cavernous and fractured rock. In this study, for this production site, the process of 3D geological modeling has been implemented. At the first stage, it provided for automated identification of reservoir volumes by comparing the data of core and well logging surveys; at the second stage, identification of rock lithotypes according to Dunham classification is performed on the basis of comparison of thin sections examination and well logging data. A large array of factual information enables the use of machine learning technology on the basis of Levenberg – Marquardt neural network apparatus toward achievement of our research goals. The prediction algorithms of reservoir and rock lithotype identification using well logging methods obtained on the basis of the training samples are applied to the wells without core sampling. The implemented approach enabled complementing the 3D geological model with information about rock permeability and porosity, taking into account the structural features of the identified lithotypes. For the Permo-Carboniferous oil deposit of the Usinskoye field, the volumetric zoning of the distribution of different rock lithotypes has been established. Taking into account the lithotypes identified based on machine learning algorithms, density and openness of fractures were determined, and fracture permeability in the deposit volume was calculated. In general, during the implementation, the machine learning errors remained within 3-5 %, which suggests reliability of the obtained predictive solutions. The results of the research are incorporated in the existing 3D digital geological and process model of the deposit under study.