Microbial communities are at the heart of all ecosystems, and yet microbial community behavior in disturbed environments remains difficult to measure and predict. Understanding the drivers of microbial community stability, including resistance (insensitivity to disturbance) and resilience (the rate of recovery after disturbance) is important for predicting community response to disturbance. Here, we provide an overview of the concepts of stability that are relevant for microbial communities. First, we highlight insights from ecology that are useful for defining and measuring stability. To determine whether general disturbance responses exist for microbial communities, we next examine representative studies from the literature that investigated community responses to press (long-term) and pulse (short-term) disturbances in a variety of habitats. Then we discuss the biological features of individual microorganisms, of microbial populations, and of microbial communities that may govern overall community stability. We conclude with thoughts about the unique insights that systems perspectives – informed by meta-omics data – may provide about microbial community stability.

ABSTRACT. Quantitative approaches to measure and assess resilience are needed to bridge gaps between science, policy, and management. In this paper, we suggest a quantitative framework for assessing ecological resilience. Ecological resilience as an emergent ecosystem phenomenon can be decomposed into complementary attributes (scales, adaptive capacity, thresholds, and alternative regimes) that embrace the complexity inherent to ecosystems. Quantifying these attributes simultaneously provides opportunities to move from the assessment of specific resilience within an ecosystem toward a broader measurement of its general resilience. We provide a framework that is based on reiterative testing and recalibration of hypotheses that assess complementary attributes of ecological resilience. By implementing the framework in adaptive approaches to management, inference, and modeling, key uncertainties can be reduced incrementally over time and learning about the general resilience of dynamic ecosystems maximized. Such improvements are needed because uncertainty about global environmental change impacts and their effects on resilience is high. Improved resilience assessments will ultimately facilitate an optimized use of limited resources for management.

Degree project in biology, Master of science (1 year), 2010 Examensarbete i biologi 30 hp till magisterexamen, 2010

Microplastic (plastic particles measuring <5mm) pollution is ubiquitous. Unlike in other well‐studied ecosystems, for example, marine and freshwater environments, microplastics in terrestrial systems are relatively understudied. Their potential impacts on terrestrial environments, in particular the risk of causing ecological surprise, must be better understood and quantified. Ecological surprise occurs when ecosystem behavior deviates radically from expectations and generally has negative consequences for ecosystem services. The properties and behavior of microplastics within terrestrial environments may increase their likelihood of causing ecological surprises as they (a) are highly persistent global pollutants that will last for centuries, (b) can interact with the abiotic environment in a complex manner, (c) can impact terrestrial organisms directly or indirectly and (d) interact with other contaminants and can facilitate their transport. Here, we compiled findings of previous research on microplastics in terrestrial environments. We systematically focused on studies addressing different facets of microplastics related to their distribution, dispersion, impact on soil characteristics and functions, levels of biological organization of tested terrestrial biota (single species vs. assemblages), scale of experimental study and corresponding ecotoxicological effects. Our systematic assessment of previous microplastic research revealed that most studies have been conducted on single species under laboratory conditions with short‐term exposures; few studies were conducted under more realistic long‐term field conditions and/or with multi‐species assemblages. Studies targeting multi‐species assemblages primarily considered soil bacterial communities and showed that microplastics can alter essential nutrient cycling functions. More ecologically meaningful studies of terrestrial microplastics encompassing multi‐species assemblages, critical ecological processes (e.g., biogeochemical cycles and pollination) and interactions with other anthropogenic stressors must be conducted. Addressing these knowledge gaps will provide a better understanding of microplastics as emerging global stressors and should lower the risk of ecological surprise in terrestrial ecosystems.

Liming has been used extensively in Scandinavia and elsewhere since the 1970s to counteract the negative effects of acidification. Communities in limed lakes usually return to acidified conditions once liming is discontinued, suggesting that liming is unlikely to shift acidified lakes to a state equivalent to pre-acidification conditions that requires no further management intervention. While this suggests a low resilience of limed lakes, attributes that confer resilience have not been assessed, limiting our understanding of the efficiency of costly management programs. In this study, we assessed community metrics (diversity, richness, evenness, biovolume), multivariate community structure and the relative resilience of phytoplankton in limed, acidified and circum-neutral lakes from 1997 to 2009, using multivariate time series modeling. We identified dominant temporal frequencies in the data, allowing us to track community change at distinct temporal scales. We assessed two attributes of relative resilience (cross-scale and within-scale structure) of the phytoplankton communities, based on the fluctuation frequency patterns identified. We also assessed species with stochastic temporal dynamics. Liming increased phytoplankton diversity and richness; however, multivariate community structure differed in limed relative to acidified and circum-neutral lakes. Cross-scale and within-scale attributes of resilience were similar across all lakes studied but the contribution of those species exhibiting stochastic dynamics was higher in the acidified and limed compared to circum-neutral lakes. From a resilience perspective, our results suggest that limed lakes comprise a particular condition of an acidified lake state. This explains why liming does not move acidified lakes out of a “degraded” basin of attraction. In addition, our study demonstrates the potential of time series modeling to assess the efficiency of restoration and management outcomes through quantification of the attributes contributing to resilience in ecosystems.