There is still little experience on the effect of the Manning roughness coefficient in coupled hydrological-hydraulic distributed models based on the solution of the Shallow Water Equations (SWE), where the Manning coefficient affects not only channel flow on the basin hydrographic network but also rainfall-runoff processes on the hillslopes. In this kind of model, roughness takes the role of the concentration time in classic conceptual or aggregated modelling methods, as is the case of the unit hydrograph method. Three different approaches were used to adjust the Manning roughness coefficient in order to fit the results with other methodologies or field observations—by comparing the resulting time of concentration with classic formulas, by comparing the runoff hydrographs obtained with aggregated models, and by comparing the runoff water volumes with observations. A wide dispersion of the roughness coefficients was observed to be generally much higher than the common values used in open channel flow hydraulics.