Soils in urban areas can accumulate heavy metals as a result of anthropogenic inputs. This research focuses on a young coastal tourist city that has been urbanized over the last 52 years and shows accelerated demographic growth and urban development. Deposition of heavy metals in soils is caused by human economic activities, which has significant implications for the environment. We evaluated heavy metal concentrations in urban sinkholes, which are sites for the natural accumulation of water and sediments. These locations also receive rainfall runoff or have been used as unregulated dumps. By performing a multistage extraction to address availability and risk, we found that Zn, Fe and Al were the predominant metals; Cu, Pb and Ni were only detected in some sinkholes. The contamination factor was high for Zn and moderate for Pb. The geoaccumulation index showed that Zn is the most abundant and available metal in urban sinkholes and the metal with the highest potential ecological risk. Between 12 and 50% of the total concentration of all metals was extracted from the organic matter phase. Correlations were found between the degree of urbanization of the city and the degree of pollution, and the trends were stronger in older sections of the city. Zn is the most prevalent element and has high concentrations. The metal concentrations in the sediments can be used as warning signs for their potential risk to environmental and human health, and these results can be compared with those of other tourist cities in karstic environments around the world.