BackgroundResearch on the submergence stress of rice has concentrated on the quiescence strategy to survive in long-term flooding conditions based on Submergence-1A (SUB1A). In the case of the ripening period, it is important that submergence stress can affect the quality as well as the survival of rice. Therefore, it is essential to understand the changes in the distribution of assimilation products in grain and ripening characteristics in submergence stress conditions. However, such studies have been insufficient at the physiological and molecular biological levels.ResultsWe confirmed that the distribution rate of assimilation products in grain was decreased by submergence treatment. These results were caused by an increase in the distribution rate of assimilation products to the stem according to escape strategy. To understand this phenomenon at the molecular level, we analyzed the relative expression levels of genes related to sucrose metabolism, and found that the sucrose phosphate synthase gene (OsSPS), which induces the accumulation of sucrose in tissues, was decreased in the seeds and leaves, but not in the stems. Furthermore, the sucrose transporter gene (OsSUT) related to sucrose transport decreased in the seeds and leaves, but increased in stems. We also analyzed the biological metabolic processes related to starch and sucrose synthesis, carbon fixation, and glycolysis using the KEGG mapper with selected differentially expressed genes (DEGs) in seeds, stems, and leaves caused by submergence treatment. We found that the expression of genes for each step related to starch and D-glucose synthesis was down-regulated in the seeds and leaves but up-regulated in the stem.ConclusionThe results of this study provide basic data for the development of varieties and corresponding technologies adapted to submergence conditions, through understanding the action network of the elements that change in the submergence condition, as well as information regarding useful DEGs.Electronic supplementary materialThe online version of this article (10.1186/s12864-018-5320-7) contains supplementary material, which is available to authorized users.

In September 2013, we discovered sooty mould growing on kenaf with the extrafloral nectaries in Iksan, Korea and identified the causative fungus as Leptoxyphium kurandae based on morphological characteristics and phylogenetic analyses. This is the first report of sooty mould caused by L. kurandae on kenaf in Korea and globally.

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The sex pheromone system of Scrobipalpa salinella (Zeller), an important pest of the halophyte Salicornia europaea in the tidal salt marshes, was studied. Z3-12:OAc and Z5-12:OAc were identified from both female pheromone glands and female emissions, but in quite different ratios. Field trapping tests demonstrated that Z3-12:OAc and Z5-12:OAc are essential for optimal attraction of male moths, and a 100:5 blend found in gland extracts is significantly more attractive to males than a 100:50 ratio similar to that found in SPME samples. Small amounts of E3-12:OAc and Z5-14:OAc also were present in pheromone gland extracts. A blend of E3-12:OAc with Z3-12:OAc attracted a few males, but was not as attractive as the binary blend of Z3-12:OAc and Z5-12:OAc. Moreover, addition of E3-12:OAc did not affect captures of males to the primary binary blend. Another glandular component, Z5-14:OAc, had no behavioral activity in field bioassays. Therefore, a synthetic mixture of Z3-12:OAc and Z5-12:OAc in a 100:5 ratio can be used as an effective tool for monitoring and control of this species.

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