SIR97 is the integration of two programs, SIR92 and CAOS, the ®rst devoted to the solution of crystal structures by direct methods, the second to re®nement via least-squares±Fourier procedures. Several new features have been introduced in SIR97 with respect to the previous version, SIR92: greater automatization, increased ef®ciency of the direct methods section, and a powerful graphics interface. The program also provides publication tables and CIF ®les.
The category Computer Program Abstracts provides a rapid means of communicating up-to-date infor Appl. CrysL (1985). 18,[189][190].J. Appl. CrysL (1994) The crystallographic problem: Our recent developments in direct-methods theory and in crystal-structure refinement persuaded us to develop a fully automated structure-determination program that is able to solve the phase problem and to refine atomic parameters in a single computer run. Method of solution:The method for automatic structure determination is based on the representation theory (Giacovazzo, 1977(Giacovazzo, , 1980. One-phase structure seminvariants and three-phase structure invariants are estimated via their second representation, two-phase seminvariants and four-phase invariants via their first representation. SIR92 is the heir of SIR88 (Burla, Camalli, Cascarano, Giacovazzo, Polidori, Spagna & Viterbo, 1989), and it retains most of the original features (Le. treatment of pseudotranslational symmetry, use of prior information, tangent weighting schemes etc.). In SIR88, one-and two-phase seminvariants and positive estimated three-phase invariants could be actively used in the phasing process. Negative estimated triplet and quartet invariants were used as a figure of merit (FOM) together with psi-zero triplets. In SIR92, negative estimated triplet and quartet invariants and psizero triplets are actively used in the © 1994 International Union of Crystallography Printed in Great Britain -all rights reserved phasing process and proved to be much more robust and efficient. The various trial solutions can be obtained either by magic-integer permutation (Main, 1978) or by random phases (Baggio, Woolfson, Declercq & Germain, 1978). The best trial solution, selected by powerful FOM's, is automatically processed through a cyclic procedure combining structure-factor calculation, least squares and 2Fo-Fc Fourier synthesis. The final outcome is a set of refined atomic parameters (x, y, z and isotropic B values) associated with suitable atomic species. The residual R value is calculated for user usefulness (final value usually between 0.08 and 0.15). The program runs in default mode when supplied with a minimum amount of information (space-group symbol, cell parameters, unit-cell chemical content and reflections) but documentation has been produced to allow the user to change default values. If a graphic device is available, the user can follow the structure solution and refinement on the screen. In the final stage, a menudriven interface is available in order to study molecular geometry and restart the refinement.Software environment: The program is written in standard Fortran77. A module written in C is supplied for interface with X-window or DEC-Window terminals for graphics. Besides a C compiler, an Xlib library is also needed. Two ASCII files are associated with the scattering program: the first contains coefficients for calculating scattering factors, the second, necessary for graphics, contains on-line help.Hardware environment: The program runs on Unix and...
SIR2004 is the evolution of the SIR2002 program [Burla, Camalli, Carrozzini, Cascarano, Giacovazzo, Polidori & Spagna (2003). J. Appl. Cryst.36, 1103]. It is devoted to the solution of crystal structures by direct and Patterson methods. Several new features implemented in SIR2004 make this program efficient: it is able to solve ab initio both small/medium‐size structures as well as macromolecules (up to 2000 atoms in the asymmetric unit). In favourable circumstances, the program is also able to solve protein structures with data resolution up to 1.4–1.5 Å, and to provide interpretable electron density maps. A powerful user‐friendly graphical interface is provided.
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SIR2014 is the latest program of the SIR suite for crystal structure solution of small, medium and large structures. A variety of phasing algorithms have been implemented, both ab initio (standard or modern direct methods, Patterson techniques, Vive la Différence) and non-ab initio (simulated annealing, molecular replacement). The program contains tools for crystal structure refinement and for the study of three-dimensional electron-density maps via suitable viewers.
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