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A revolution is occurring in ecological and evolutionary genetics, driven by the development of techniques such as Restriction-site-Associated DNA sequencing (RADseq) that allow relatively low-cost discovery and genotyping of thousands of genetic markers for any species, including nonmodel species. Here we provide an overview of the diverse RADseq techniques that have been developed and highlight some of the research questions these powerful methods can be used to answer. We discuss how technical differences among the many variant methods lead to trade-offs in experimental design and analysis, and describe general considerations for designing a RADseq study.