A 500, 400 and 300 MHz proton NMR study of the reaction product of cis-Pt(NH3)2Cl2 or cis-[Pt(NH3)2 (H2O)2] (NO3)2 with the deoxydinucleotide d(GpG): cis-[Pt(NH3)2 d(GpG)] was carried out. Complete assignment of the proton resonances by decoupling experiments and computer simulation of the high field part of the spectrum yield proton-proton and proton-phosphorus coupling constants of high precision. Analysis of these coupling constants reveal a 100% N (C3'-endo) conformation for the deoxyribose ring at the 5'-terminal part of the chelated d(GpG) moiety. In contrast, the 3'-terminal -pG part of the molecule displays the normal behaviour for deoxyriboses: the sugar ring prefers to adopt an S (C2'-endo) conformation (about 70%). Extrapolating from this model compound, it is suggested that Pt chelation by a -dGpdG- sequence of DNA would require a S to N conformational change of one deoxyribose moiety as the main conformational alteration and lead to a kink in one strand of the double-helical structure of DNA.
A conformational study of the double‐stranded decanucleotide d(GCCG*G*ATCGC) · d(GCGATCCGGC), with the G* guanines chelating a cis‐Pt(NH3)2 moiety, has been accomplished using 1H and 31P NMR, and molecular mechanics. Correlation of the NMR data with molecular models has disclosed an equilibrium between several kinked conformations and has ruled out an unkinked structure. The deformation is localized at the CG*G*· CCG trinucleotide where the helix is kinked by approximately 60° towards the major groove and unwound by 12–19°. The models revealed an unexpected mobility of the cytosine complementary to the 5′‐G*. This cytosine can stack on either branch of the kinked complementary strand. The energy barrier between the two positions has been calculated to be ≤ 12 kJ/mol. The NMR data are in support of rapid flip‐flopping of this cytosine. An explanation for the strong downfield shift observed in the 31P resonance of the G*pG* phosphate is given.
Direct evidence for the involvement of thiophene
S-oxide as a key primary reactive intermediate in
the
metabolism of thiophene (1) in rats was obtained from the
isolation of two diastereoisomeric thiophene
S-oxide
dimers, 4a and 4b, both in vitro
(oxidation of thiophene with rat liver microsomes) and in
vivo (isolation of 4a from
rat urine). The structure of these dimers was established after an
original preparation of identical samples by oxidation
of thiophene with H2O2 and
CF3COOH. In fact, the
H2O2/CF3COOH system appeared
to be the best oxidizing
agent for the selective transformation of thiophene to its
S-oxide. The complete determination of the structures
of
4a and 4b was carried out for the first time by
X-ray diffraction for the former and by a sequence of
chemical
reactions for the latter. The reported results indicate two fates
for thiophene S-oxide in vivo: (i) its
dimerization via
a Diels−Alder reaction and (ii) its reaction with nucleophiles such
as glutathione leading eventually to mercapturates.
These results together with recent literature data on thiophene
derivatives suggest that thiophene S-oxides, a class
of
reactive intermediates whose chemistry is still not well-known, could
play a central role in the metabolism and toxic
effects of thiophenes in mammals. This situation would be
different from that observed in the metabolism of other
aromatic compounds, such as benzene or furan, in which arene oxides are
predominant intermediates.
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