A discontinuity of magnetic circuits according to the end effect is generated in the permanent magnet linear synchronous motor (PMLSM). Due to the unbalanced back electro-motive force (EMF) and impedance produced, unbalanced current is generated. The circulating current, which is caused by a decrease in the thrust, is generated by the unbalanced current. The optimal design of auxiliary-teeth at the end of the mover was carried out to solve the unbalance of phase by using design of experiment (DOE), and compared with the basic model through finite element analysis (FEA). As a result, the auxiliary-teeth model compensates for the decrease of thrust caused by the unbalanced phase. Also, this model is proven to reduce the detent force by the vibration and noise of the PMLSM and copper loss caused by the circulating current.