Characterization of cowpea (Vigna unguiculata[Areas not yet explored and those that need additional sampling were identified. The study demonstrated a significant amount of diversity among the germplasm based on the analysis of variance (ANOVA) and Shannon Weaver Diversity Index (H'). The majority of accessions had their first flowering more than 50 days after sowing and 100 days for 95% of maturity which shows that they are more inclined towards late maturing cowpeas. Early maturing accessions with less than 110 days to maturity are found in Ngamiland, Southeast and unknown origin. The accessions from Central districts had the largest variation for most characters (11) followed by Southeast with 10 among the 22 quantitative characters evaluated. Principal components analysis (PCA), revealed characters which discriminated more efficiently between accessions than others such as peduncle length, 10 seeds weight, seed width, seed thickness, pods per peduncle, and 100 seed weight. Cluster analysis delineates germplasm into three clusters, based on the origin of the germplasm according to different agro-ecological zones. Germplasm accessions originating from Ngamiland formed a separate cluster from the rest and had several peculiar materials, which could be a potential source for new germplasm for cowpea improvement. Further molecular studies are required to complement and validate the current agromorphological variation observed in the Botswana cowpea germplasm.