Today's military missions require pre-emptive knowledge of hostile activities in and around the conflict zone. Using a multi rotor UAV for Reconnaissance has many disadvantages, such as cost, range, reduced maneuverability and much more. The main objective is to make the UAV completely autonomous, with the transmitter on standby. By entering the flight plan into the Ground Control System, the UAV will complete the assigned mission autonomously and will be guided by an operational flight plan wherein active waypoints are plotted in the GCS. The GCS can be linked to the Telemetry and the Global Positioning System to have a complete knowledge of the UAV location.