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This paper considers the main principles and technologies used in developing the operational modeling system for the Ussuri River Basin of 24,400 km 2 based on the automated system of hydrological monitoring and data management (ASHM), the physical-mathematical model with distributed parameters ECOMAG (ECOlogical Model for Applied Geophysics) and the numerical mesoscale atmosphere model WRF (Weather Research and Forecasting Model). The system is designed as a freely combined tool that allows flexible changing of the forecasting and informational components. The technology of inter-model and cross-platform interoperability is based on the use of the Simple Object Access Protocol (SOAP) web services and the Open Geospatial Consortium Open Modelling Interface (OGC OpenMI) standard. The system demonstrates good performance in short-term forecast of rainfall floods and reproduces complex spatio-temporal structure for the runoff formation during extreme rainfall.