Plant phenology becoming a focus of current research worldwide is a sensitive indicator of global climate change. To understand observed soybean phenology and explore its climatic determinants in frigid region (Northeast China and northeast in Inner Mongolia), we studied the phenological changes of soybean [Glycine max (L.) Merr.] for the frigid region during 1981–2017, then analyzed the contribution of major causal climate factors to phenology based on multiple stepwise regression. Altogether, the average temperature from sowing to maturity (WGP) was significant increasing, accumulated precipitation and sunshine hours were decreasing. More than 50% of observations showed delays in sowing, emergence and maturity stage and short durations of sowing to flowering (VGP), flowering to maturity (RGP) and sowing to maturity (WGP). The late sowing was getting the following phenological timing backward, but the flowering and maturity delaying trends were much less than that of sowing timing due to the warming accelerated growth of soybean. Detailed analysis indicated mean temperature and accumulated precipitation of the 1–3 months immediately preceding the mean emergence, flowering and maturity dates influenced the phenological timing in higher latitude areas (HLJ and FL), while in JL and LN, accumulated precipitation and sunshine hours(replacing mean temperature) were the climatic determinants. These results brought light the importance of research and policy to support strategies for adaptation to local condition under the climate change.