This paper presents a methodology for the dynamic estimation of traffic flows on all links of a network from observable field data assuming the first-in-first-out (FIFO) hypothesis. The traffic flow intensities recorded at the exit of the scanned links are propagated to obtain the flow waves on unscanned links. For that, the model calculates the flow-cost functions through information registered with the plate scanning technique. The model also responds to the concern about the parameter quality of flow-cost functions to replicate the real traffic flow behaviour. It includes a new algorithm for the adjustment of the parameter values to link characteristics when its quality is questionable. For that, it is necessary the a priori study of the location of the scanning devices to identify all path flows and to measure travel times in all links. A synthetic network is used to illustrate the proposed method and to prove its usefulness and feasibility.