j1 diagnostic abilities. They can be used to predict the biological activity (e.g., IC 50 ) or class (e.g., inhibitor versus noninhibitors) of compounds before the actual biological testing. They can also be used in the analysis of structural characteristics that can give rise to the properties of interest.As illustrated in Figure 1.1, developing QSAR models starts with the collection of data for the property of interest while taking into consideration the quality of the data. It is necessary to exclude low-quality data as they will lower the quality of the model. Following that, representation of the collected molecules is done through the use of features, namely molecular descriptors, which describes important information of the molecules. There are many types of molecular descriptors but not all will be useful for a particular modeling task. Thus, uninformative or redundant molecular descriptors should be removed before the modeling process. Subsequently, for tuning and validation of the QSAR model, the full data set is divided into a training set and a testing set prior to learning.During the learning process, various modeling methods like multiple linear regression, logistic regression, and machine learning methods are used to build models that describe the empirical relationship between the structure and property of interest. The optimal model is obtained by searching for the optimal modeling parameters and feature subset simultaneously. This finalized model built from the optimal parameters will then undergo validation with a testing set to ensure that the model is appropriate and useful. Figure 1.1 General workflow of developing a QSAR model. 2j 1 Current Modeling Methods Used in QSAR/QSPR Figure 1.3 A simple structure showing the three layers of an artificial neural network. 6j 1 Current Modeling Methods Used in QSAR/QSPR Figure 1.4 GRNN is a neural network with four layers.
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