The prevalence of ten antibiotic resistance genes (ARGs) was evaluated in a total of 616 Escherichia coli isolates from swine manure, swine lagoon effluent, and from soils that received lagoon effluent on a commercial swine farm site in Sampson County, North Carolina (USA). Isolates with ARGs coding for streptomycin/spectinomycin (aadA/strA and strB), tetracycline (tetA and tetB), and sulfonamide (sul1) occurred most frequently (60.6-91.3%). The occurrence of E. coli isolates that carried aadA, tetA, tetB, and tetC genes was significantly more frequent in soil samples (34.0-97.2%) than in isolates from lagoon samples (20.9-90.6%). Furthermore, the frequency of isolates that contain genes coding for aadA and tetB was significantly greater in soil samples (82.6-97.2%) when compared to swine manure (16.8-86.1%). Isolates from the lagoon that carried tetA, tetC, and sul3 genes were significantly more prevalent during spring (63.3-96.7%) than during winter (13.1-67.8%). The prevalence of isolates from the lagoon that possessed the strA, strB, and sul1 resistance genes was significantly more frequent during the summer (90.0-100%) than during spring (66.6-80.0%). The data suggest that conditions in the lagoon, soil, and manure may have an impact on the occurrence of E. coli isolates with specific ARGs. Seasonal variables seem to impact the recovery isolates with ARGs; however, ARG distribution may be associated with mobile genetic elements or a reflection of the initial numbers of resistant isolates shed by the animals.

Abstract:The high concentration of swine production in southeastern North Carolina generates public health concerns regarding the potential transport of pathogens from these production systems to nearby surface waters. The microbial source tracking (MST) tool, antibiotic resistance analysis (ARA), was used to identify sources of E. coli in a segment of Six Runs Creek in Sampson County, North Carolina. Among 52 water samples, fecal coliform (FC) counts averaged 272.1 ± 181.6 CFU/100 mL. Comparisons of isolates from water samples to an ARA library with an average rate of correct classification (ARCC) of 94.3% indicated an average of 64% and 27.1% of 1,961 isolates from Six Runs Creek were associated with lagoon effluent and cattle manure respectively. The potential for aerosol transport of bacteria during lagoon spray events, as well as, the potential for wildlife to serve as a vehicle of transport for bacteria from fields and lagoons to nearby surface waters should be investigated further.