Structural health monitoring for offshore wind turbine foundations is paramount to the further development of offshore fixed wind farms. At present time there are a limited number of foundation designs, the jacket type being the preferred one in large water depths. In this work, a jacket-type foundation damage diagnosis strategy is stated. Normally, most or all the available data are of regular operation, thus methods that focus on the data leading to failures end up using only a small subset of the available data. Furthermore, when there is no historical precedent of a type of fault, those methods cannot be used. In addition, offshore wind turbines work under a wide variety of environmental conditions and regions of operation involving unknown input excitation given by the wind and waves. Taking into account the aforementioned difficulties, the stated strategy in this work is based on an autoencoder neural network model and its contribution is two-fold: (i) the proposed strategy is based only on healthy data, and (ii) it works under different operating and environmental conditions based only on the output vibration data gathered by accelerometer sensors. The proposed strategy has been tested through experimental laboratory tests on a scaled model.