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Blown algae like wakame (Undaria pinnatifida) and kombu (Laminaria sp.) are popular foods in East Asia. These edible algae have been used as rich sources of minerals, vitamins and dietary fibers. They have been attracted recently as multifunctional foods for maintaining our health.Fucoidan (fucan sulfate) is a fucose-containing sulfated polysaccharide from brown algae such as Fucus vesiculosus, 1) Ecklonia kurome, 2) and Cladosiphon okamuranus.3) Fucoidans showed various biological activities like anticoagulant 4) and antivirus. 5) In addition, fucoidan prevents microvascular thrombus formation induced by endothelial damage in arterioles and venules in vivo.6) It is suggested that this activity is not attributable to inhibition of P-and L-selectin but instead to the anticoagulative capacity of fucoidan. Thus, fucoidan might be useful for anticoagulant, antiviral, and anti-thrombus formation agent.Mekabu is a sporophyll of U. pinnatifida and it is also used as a safe, inexpensive and savory food in Japan. It has been reported that Mekabu has potential for chemoprevention of human breast cancer since Mekabu extract shows strong suppressive effect on rat mammary carcinogenesis.7) In addition, Mekabu fucoidan showed antitumor effect in vivo and its mechanism was mediated by IFN-g activated NK cells.8) Although Mekabu fucoidan has been subjected to different kinds of biological evaluation, its structural feature is still unknown. This paper describes the structural characterization of Mekabu fucoidan as well as evaluation for its antiviral effects. Results and DiscussionAfter washing and crushing the dried alga, it was treated with EtOH to remove lipophyllic compounds. The defatted alga was then extracted with 0.15 N HCl to prevent extraction of alginates. After neutralization and precipitation with 4 vol. of EtOH, crude fucoidan (CF) was obtained. CF was successively fractionated by ion exchange column chromatographies on DEAE Toyopearl 650M and Q-Sepharose FF and gel filtration on Sephacryl S-300 HR. As indicated in Fig. 1, CF was separated to four fractions. The most abundant fraction (CF-4) was further fractionated by Q-Sepharose (Fig. 2), and the second eluate (CF-4B) was collected. Then CF-4B was applied to a gel filtration on Sephacryl S-300 HR (Fig. 3) and the most abundant fraction was collected as purified fucoidan.The fucoidan was eluted as a single peak, and its apparent molecular weight was estimated to be 9000 by HPLC on TSK gel GMPW XL . In addition, the electrophoretic pattern indicated that the electric charge of fucoidan was homogeneous (Fig. 4). These results revealed that the fucoidan might be a homogeneous polysaccharide on the basis of molecular Medicine, Toyama Medical and Pharmaceutical University; 2630 Sugitani, Toyama 930-0194, Japan: and c Riken Vitamin Co., Ltd.; 3 2-9-18 Misaki-cho, Chiyoda-ku, Tokyo 101-8370, Japan. Received April 8, 2004; accepted June 9, 2004 Structural characterization and antiviral activities of fucoidan from sporophyll of Undaria pinnatifida (Mekabu) was exa...

Background: We demonstrated that mekabu fucoidan obtained from Undaria pinnatifida (Up) sporophylls augments the type 1 T-helper (Th1) cell response in normal BALB/c mice. In this study, we examined the effects of the fucoidan of mekabu on the type 2 T-helper (Th2) response in bronchoalveolar lavage fluid (BALF) after ovalbumin (OVA) aerosol challenge. Methods: Mekabu fucoidan (50 mg/kg) was injected intraperitoneally into BALB/c mice for 4 days, and then the mice were sensitized with 50 µg/mouse of OVA plus alum (1 mg/mouse) 1 and 8 days later. The mice were challenged with OVA delivered using a nebulizer 7, 8 and 9 days after the second challenge with OVA plus alum. After 24 h, we assessed T cell responses in BALF by measuring the amount of Th2 cytokines (IL-4, IL-5, IL-13) and γ-interferon (IFN-γ) produced by Th1 cells. Results: The production of Th2 cytokines was suppressed (p < 0.05), and the amount of IFN-γ was not increased in the mice treated with mekabu fucoidan. Anti-OVA immunoglobulin E (IgE) and IgE levels in serum determined after challenge with aerosolized OVA at the end of the experiment were lower (p < 0.05) in the treated than in the control mice. Conclusions: The pulmonary inflammation was relieved by mekabu fucoidan, which also downregulated Th2-dominated responses. These results indicate that mekabu fucoidan modulates Th2 responses and might be useful for treating allergic inflammation.

We report on optimized molecular geometries and electronic properties calculated by the PM6 method for 94.0% of the 91.6 million molecules cataloged in PubChem Compounds retrieved on August 29, 2016. In addition to neutral states, we also calculated those for cationic, anionic, and spin flipped electronic states of 56.2%, 49.7%, and 41.3% of the molecules, respectively. Thus, the grand total of the PM6 calculations amounted to 221 million. We compared the resulting molecular geometries with B3LYP/6-31G* optimized geometries for 2.6 million molecules. The root-mean-square deviations in bond length and bond angle were approximately 0.016 Å and 1.7°, respectively. Then, using linear regression to examine the HOMO energy levels E(HOMO) in the B3LYP and PM6 calculations, we found that E B3LYP (HOMO) = 0.876E PM6 (HOMO) + 1.975 (eV) and calculated the coefficient of determination to be 0.803. Likewise, we examined the LUMO energy levels and found E B3LYP (LUMO) = 1.069E PM6 (LUMO) − 0.420 (eV); the coefficient of determination was 0.842. We also generated four subdata sets, each of which was composed of molecules with molecular weights less than 500.

This paper reports on a tool for fine-grained analysis of structural changes made between revisions of programs. The tool, called Diff/TS, calculates, visualizes and classifies edit operations including "moves" that will change one revision into another by means of detailed tree structural analysis on source code. Such analysis tends to be time consuming and inflexible. We have extended a general tree comparison algorithm with heuristics driven control configurable for multiple programming languages and have achieved both processing speed and analysis precision needed for investigating large-scale software projects. The tool is capable of processing Python, Java, C and C++ projects. We present several applications including software "archaeology" on a widely known open source software project and automated "phylogenetic" malware classification based on control flows. These examples suggest that tree differencing is useful for measuring distance or dissimilarity between tree structured artifacts, and offer good precision tests of the method.