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Sheep detection and segmentation will play a crucial role in promoting the implementation of precision livestock farming in the future. In sheep farms, the characteristics of sheep that have the tendency to congregate and irregular contours cause difficulties for computer vision tasks, such as individual identification, behavior recognition, and weight estimation of sheep. Sheep instance segmentation is one of the methods that can mitigate the difficulties associated with locating and extracting different individuals from the same category. To improve the accuracy of extracting individual sheep locations and contours in the case of multiple sheep overlap, this paper proposed two-stage sheep instance segmentation SheepInst based on the Mask R-CNN framework, more specifically, RefineMask. Firstly, an improved backbone network ConvNeXt-E was proposed to extract sheep features. Secondly, we improved the structure of the two-stage object detector Dynamic R-CNN to precisely locate highly overlapping sheep. Finally, we enhanced the segmentation network of RefineMask by adding spatial attention modules to accurately segment irregular contours of sheep. SheepInst achieves 89.1%, 91.3%, and 79.5% in box AP, mask AP, and boundary AP metric on the test set, respectively. The extensive experiments show that SheepInst is more suitable for sheep instance segmentation and has excellent performance.

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Single-cell clustering is the most significant part of single-cell RNA sequencing (scRNA-seq) data analysis. One main issue facing the scRNA-seq data is noise and sparsity, which poses a great challenge for the advance of high-precision clustering algorithms. This study adopts cellular markers to identify differences between cells, which contributes to feature extraction of single cells. In this work, we propose a high-precision single-cell clustering algorithm-SCMcluster (single-cell cluster using marker genes). This algorithm integrates two cell marker databases(CellMarker database and PanglaoDB database) with scRNA-seq data for feature extraction and constructs an ensemble clustering model based on the consensus matrix. We test the efficiency of this algorithm and compare it with other eight popular clustering algorithms on two scRNA-seq datasets derived from human and mouse tissues, respectively. The experimental results show that SCMcluster outperforms the existing methods in both feature extraction and clustering performance. The source code of SCMcluster is available for free at https://github.com/HaoWuLab-Bioinformatics/SCMcluster.