BackgroundMacrophomina phaseolina is one of the most destructive necrotrophic fungal pathogens that infect more than 500 plant species throughout the world. It can grow rapidly in infected plants and subsequently produces a large amount of sclerotia that plugs the vessels, resulting in wilting of the plant.ResultsWe sequenced and assembled ~49 Mb into 15 super-scaffolds covering 92.83% of the M. phaseolina genome. We predict 14,249 open reading frames (ORFs) of which 9,934 are validated by the transcriptome. This phytopathogen has an abundance of secreted oxidases, peroxidases, and hydrolytic enzymes for degrading cell wall polysaccharides and lignocelluloses to penetrate into the host tissue. To overcome the host plant defense response, M. phaseolina encodes a significant number of P450s, MFS type membrane transporters, glycosidases, transposases, and secondary metabolites in comparison to all sequenced ascomycete species. A strikingly distinct set of carbohydrate esterases (CE) are present in M. phaseolina, with the CE9 and CE10 families remarkably higher than any other fungi. The phenotypic microarray data indicates that M. phaseolina can adapt to a wide range of osmotic and pH environments. As a broad host range pathogen, M. phaseolina possesses a large number of pathogen-host interaction genes including those for adhesion, signal transduction, cell wall breakdown, purine biosynthesis, and potent mycotoxin patulin.ConclusionsThe M. phaseolina genome provides a framework of the infection process at the cytological and molecular level which uses a diverse arsenal of enzymatic and toxin tools to destroy the host plants. Further understanding of the M. phaseolina genome-based plant-pathogen interactions will be instrumental in designing rational strategies for disease control, essential to ensuring global agricultural crop production and security.

Jute (Corchorus sp.) is one of the most important sources of natural fibre, covering ∼80% of global bast fibre production1. Only Corchorus olitorius and Corchorus capsularis are commercially cultivated, though there are more than 100 Corchorus species2 in the Malvaceae family. Here we describe high-quality draft genomes of these two species and their comparisons at the functional genomics level to support tailor-designed breeding. The assemblies cover 91.6% and 82.2% of the estimated genome sizes for C. olitorius and C. capsularis, respectively. In total, 37,031 C. olitorius and 30,096 C. capsularis genes are identified, and most of the genes are validated by cDNA and RNA-seq data. Analyses of clustered gene families and gene collinearity show that jute underwent shared whole-genome duplication ∼18.66 million years (Myr) ago prior to speciation. RNA expression analysis from isolated fibre cells reveals the key regulatory and structural genes involved in fibre formation. This work expands our understanding of the molecular basis of fibre formation laying the foundation for the genetic improvement of jute.

Seed germination and seedling growth are two essential early determinants of subsequent crop yield and quality. A high germination percentage of industrial hemp (Cannabis sativa L.) seed is required to import into Australia. The viability of hemp seed can decline rapidly depending on storage and other factors; hence, the quality of imported seed is not always reliable. Here, we aimed to investigate germination and early seedling growth responses of 14 industrial hemp varieties after being imported from various countries. Germination trials were conducted with 100 seeds of 14 varieties using a soil-less Petri dish assay and a compost growth medium under glasshouse conditions. We also assessed the effect of seed pre-treatments such as gibberellic acid (500 and 1000 mg·L−1), chlorine dioxide (500 and 1000 mg·L−1) and cold temperature (4 °C for 72 h) using 300 seeds of each of the three selected varieties in compost growth medium. Hemp varieties imported from China had higher germination and better seedling growth indices than those imported from Europe. All seed pre-treatments were associated with a decreasing trend in germination, but a positive effect on early growth responses was observed. Our findings indicate that the hemp variety Han FNQ performed better than many other varieties did regarding seed germination and seedling growth. Hemp seeds sanitising with 500 mg·L−1 of chlorine dioxide might improve the germination and early growth of seedlings.

The macro-and micro-nutrients of locally produced pineapples namely Giant Kew and Honey Queen were compared. The Giant Kew variety contained 6 g% of TSS, 3.88 g% of total sugar and 1.75 g% of non reducing sugar. On the contrary, the Honey Queen variety contained 10 g% of TSS, 4.84 g% of total sugar and 1.59 g% of non reducing sugar. The comparative study indicates that the Honey Queen variety is superior in nutritional content as well as sweetness than the Giant Kew variety of pineapple.