Recently, the mud-crab farming can help the rural population economically. However, the existing parasite in the mud-crabs could interfere the long live of the mud-crabs. Unfortunately, the parasite has been identified to live in hundreds of mud-crabs, particularly it happened in Terengganu Coastal Water, Malaysia. This study investigates the initial identification of the parasite features based on their classes by using machine learning techniques. In this case, we employed five classifiers i.e logistic regression (LR), k-nearest neighbors (kNN), Gaussian Naive Bayes (GNB), support vector machine (SVM), and linear discriminant analysis (LDA). We compared these five classfiers to best performance of classification of the parasites. The classification process involving three stages. First, classify the parasites into two classes (normal and abnormal) regardless of their ventral types. Second, classified sexuality (female or male) and maturity (mature or immature). Finally, we compared the five classifiers to identify the species of the parasite. The experimental results showed that GNB and LDA are the most effective classifiers for carrying out the initial classification of the rhizocephalan parasite within the mud crab genus Scylla.