It is evident that epigenetic factors, especially DnA methylation, have essential roles in obesity development. Here, using pig as a model, we investigate the systematic association between DnA methylation and obesity. We sample eight variant adipose and two distinct skeletal muscle tissues from three pig breeds living within comparable environments but displaying distinct fat level. We generate 1,381 Gb of sequence data from 180 methylated DnA immunoprecipitation libraries, and provide a genome-wide DnA methylation map as well as a gene expression map for adipose and muscle studies. The analysis shows global similarity and difference among breeds, sexes and anatomic locations, and identifies the differentially methylated regions. The differentially methylated regions in promoters are highly associated with obesity development via expression repression of both known obesity-related genes and novel genes. This comprehensive map provides a solid basis for exploring epigenetic mechanisms of adipose deposition and muscle growth.

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BackgroundReduced representation bisulfite sequencing (RRBS) was developed to measure DNA methylation of high-CG regions at single base-pair resolution, and has been widely used because of its minimal DNA requirements and cost efficacy; however, the CpG coverage of genomic regions is restricted and important regions with low-CG will be ignored in DNA methylation profiling. This method could be improved to generate a more comprehensive representation.ResultsBased on in silico simulation of enzyme digestion of human and mouse genomes, we have optimized the current single-enzyme RRBS by applying double enzyme digestion in the library construction to interrogate more representative regions. CpG coverage of genomic regions was considerably increased in both high-CG and low-CG regions using the double-enzyme RRBS method, leading to more accurate detection of their average methylation levels and identification of differential methylation regions between samples. We also applied this double-enzyme RRBS method to comprehensively analyze the CpG methylation profiles of two colorectal cancer cell lines.ConclusionThe double-enzyme RRBS increases the CpG coverage of genomic regions considerably over the previous single-enzyme RRBS method, leading to more accurate detection of their average methylation levels. It will facilitate genome-wide DNA methylation studies in multiple and complex clinical samples.

a b s t r a c tIn this paper, the dynamical behaviors of an SEIR epidemic system governed by differential and algebraic equations with seasonal forcing in transmission rate are studied. The cases of only one varying parameter, two varying parameters and three varying parameters are considered to analyze the dynamical behaviors of the system. For the case of one varying parameter, the periodic, chaotic and hyperchaotic dynamical behaviors are investigated via the bifurcation diagrams, Lyapunov exponent spectrum diagram and Poincare section. For the cases of two and three varying parameters, a Lyapunov diagram is applied. A tracking controller is designed to eliminate the hyperchaotic dynamical behavior of the system, such that the disease gradually disappears. In particular, the stability and bifurcation of the system for the case which is the degree of seasonality β 1 = 0 are considered. Then taking isolation control, the aim of elimination of the disease can be reached. Finally, numerical simulations are given to illustrate the validity of the proposed results.

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