Microbiology is a branch of biological science that studies microorganisms, most of interest and important are includes in collections for maintenance and distribution. Since biotechnology science goes the requirements to the collections of microorganisms as a reliable and informationally associated biological material also increase. The digitalization, processing and standardization of National Collection of Non-Pathogenic Microorganisms scientific data facilitates their sharing and reuse between science and industry fields. As a project result digital tools of National Collection of Non-Pathogenic Microorganisms information system will be developed, respecting the Open Science practices regarding the management of scientific data.