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This paper addresses the problem of frequency stability prediction (FSP) following active power disturbances in power systems by proposing a vision transformer (ViT) method that predicts frequency stability in real time. The core idea of the FSP approach employing the ViT is to use the time-series data of power system operations as ViT inputs to perform FSP accurately and quickly so that operators can decide frequency control actions, minimizing the losses caused by incidents. Additionally, due to the high-dimensional and redundant input data of the power system and the O(N2) computational complexity of the transformer, feature selection based on copula entropy (CE) is used to construct image-like data with fixed dimensions from power system operation data and remove redundant information. Moreover, no previous FSP study has taken safety margins into consideration, which may threaten the secure operation of power systems. Therefore, a frequency security index (FSI) is used to form the sample labels, which are categorized as “insecurity”, “relative security”, and “absolute security”. Finally, various case studies are carried out on a modified New England 39-bus system and a modified ACTIVSg500 system for projected 0% to 40% nonsynchronous system penetration levels. The simulation results demonstrate that the proposed method achieves state-of-the-art (SOTA) performance on normal, noisy, and incomplete datasets in comparison with eight machine-learning methods.