No abstract

No abstract

Measurements of the kinematic distributions of J /ψ mesons produced in p-C, p-Ti and p-W collisions at √ s = 41.6 GeV in the Feynman-x region −0.34 < x F < 0.14 and for transverse momentum up to p T = 5.4 GeV/c are presented. The x F and p T dependencies of the nuclear suppression parameter, α, are also given. The results are based on 2.4 × 10 5 J /ψ mesons reconstructed in both the e + e − and μ + μ − decay channels. The data have been collected by the HERA-B experiment at the HERA proton ring of the DESY laboratory. The measurement explores the negative region of x F for the first time. The average value of α in the measured x F region is 0.981 ± 0.015. The data suggest that the strong nuclear suppression of J /ψ production previously observed at high x F turns into an enhancement at negative x F .

No abstract

We describe a fast ab initio method for modeling local segments in protein structures. The algorithm is based on a divide and conquer approach and uses a database of precalculated look-up tables, which represent a large set of possible conformations for loop segments of variable length. The target loop is recursively decomposed until the resulting conformations are small enough to be compiled analytically. The algorithm, which is not restricted to any specific loop length, generates a ranked set of loop conformations in 20-180 s on a desktop PC. The prediction quality is evaluated in terms of global RMSD. Depending on loop length the top prediction varies between 1.06 A RMSD for three-residue loops and 3.72 A RMSD for eight-residue loops. Due to its speed the method may also be useful to generate alternative starting conformations for complex simulations.