Large-scale multi-ethnic cohorts offer unprecedented opportunities to elucidate the genetic factors influencing complex traits related to health and disease among minority populations. At the same time, the genetic diversity in these cohorts presents new challenges for analysis and interpretation. We consider the utility of race and/or ethnicity categories in genome-wide association studies (GWASs) of multi-ethnic cohorts. We demonstrate that race/ethnicity information enhances the ability to understand population-specific genetic architecture. To address the practical issue that self-identified racial/ethnic information may be incomplete, we propose a machine learning algorithm that produces a surrogate variable, termed HARE. We use height as a model trait to demonstrate the utility of HARE and ethnicity-specific GWASs.
The relationship between stress and obesity was assessed in male rats selectively bred to develop either diet-induced obesity (DIO) or diet resistance (DR) when fed a high-energy, 31% fat diet for 3 wk followed by 2 wk on a hyperphagic liquid diet (Ensure). One-half of the rats of each phenotype were subjected to moderate daily, unpredictable stress (cage changing, exposure to conspecific, swim, and immobilization stress, intraperitoneal saline injection) during the 5 wk. Both stressed and unstressed DIO rats were 26% heavier and ate 27% more than comparable DR rats at onset and had 48% lower basal morning plasma corticosterone levels. Stressed DR rats gained less weight and had significant elevations of basal morning corticosterone but reduced basal sympathetic activity (24-h urine norepinephrine) over 5 wk compared with their unstressed DR controls. Terminally, there was a 35% increase in the paraventricular nucleus corticotropin-releasing hormone mRNA expression. On the other hand, stressed DIO rats showed only a transient early increase in open-field activity and a terminal increase in basal corticosterone levels as the only effects of stress. Thus DIO rats are hyporesponsive to chronic stress compared with DR rats. This is in keeping with several other known differences in hypothalamopituitary and autonomic function in this model.
In this proof-of-concept study, we demonstrated application of the PheWAS using large EHR biobanks to inform drug effects. The findings of an association of the IL6R SNP with reduced risk for aortic aneurysms correspond with the newest indication for IL6R blockade, giant cell arteritis, of which a major complication is aortic aneurysm.
Avoidance in the face of novel situations or uncertainty is a prime feature of behavioral inhibition which has been put forth as a risk factor for the development of anxiety disorders. Recent work has found that behaviorally inhibited (BI) individuals acquire conditioned eyeblinks faster than non-inhibited (NI) individuals in omission and yoked paradigms in which the predictive relationship between the conditioned stimulus (CS) and unconditional stimulus (US) is less than optimal as compared to standard training with CS-US paired trials (Holloway et al., 2014). In the current study, we tested explicitly partial schedules in which half the trials were CS alone or US alone trials in addition to the standard CS-US paired trials. One hundred and forty nine college-aged undergraduates participated in the study. All participants completed the Adult Measure of Behavioral Inhibition (i.e., AMBI) which was used to group participants as BI and NI. Eyeblink conditioning consisted of three US alone trials, 60 acquisition trials, and 20 CS-alone extinction trials presented in one session. Conditioning stimuli were a 500 ms tone CS and a 50-ms air puff US. Behaviorally inhibited individuals receiving 50% partial reinforcement with CS alone or US alone trials produced facilitated acquisition as compared to NI individuals. A partial reinforcement extinction effect (PREE) was evident with CS alone trials in BI but not NI individuals. These current findings indicate that avoidance prone individuals self-reporting behavioral inhibition over-learn an association and are slow to extinguish conditioned responses (CRs) when there is some level of uncertainty between paired trials and CS or US alone presentations.
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