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The Cowichan fold and thrust system on southern Vancouver Island comprises a linked system of folds and thrust faults in crystalline and sedimentary rocks of the Wrangellia terrane and its sedimentary cover, the Upper Cretaceous Nanaimo Group, and Upper Paleocene to Lower Eocene sandstones of the Chuckanut Formation. Apatite fission-track analysis indicates that cooling below the closure temperature of fission-track retention in apatite (100 ± 20 °C) for both the Island Plutonic Suite from the Wrangellian basement and the Nanaimo Group occurred at ~ 50–40 Ma (Middle Eocene). Thrusting is interpreted to have occurred immediately prior to this time in the Middle Eocene, but after post-Cretaceous regional burial of the Turonian to Maastrichtian Nanaimo Group and deposition of Upper Paleocene and Lower Eocene sandstones, which are involved in the deformation. These timing constraints support the hypothesized temporal linkage between contraction and uplift of Wrangellia during the Middle Eocene and continued margin-normal contraction of the Pacific Rim terrane (± the Crescent terrane) at ~ 45 Ma.

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The Upper Cretaceous Nanaimo Group consists of extensive shaly units and lenticular bodies of sandstone and conglomerate deposited in neritic to bathyal marine paleoenvironments. Single sandstone and conglomerate lenses cannot be traced throughout the basin, but instead tend to concentrate at particular stratigraphic levels, defining crudely sheet-like composite units of coarse-grained rocks. Many of the lenticular coarse-grained units rest in major channels, as deep as about 550 m. Sand and gravel were generally transported to the west and northwest by sediment gravity flows through these channels into the basin centre. Recognition of widespread channeling is critical to the definition of formal lithostratigraphic units (four formations and two informal members are defined here for the upper Nanaimo Group).The top of the Nanaimo Group is probably truncated by a major unconformity with local relief of at least 2 km. The effect of the unconformity can only be seen by mapping the orientation of offshore ridges in the Strait of Georgia, which can be traced into the sandstones and conglomerates above the inferred unconformity on Tumbo and Cabbage islands. Large scale cross-bedding, unidirectional paleocurrents, and lack of evidence for marine conditions favour a subaerial, fluvial setting for deposition of these rocks, which correlate to the lithologically similar Paleogene Chuckanut Formation on the Sucia Islands.