In Taiwan, cervical cancer is ranked sixth among all causes of death in women. With the goal of reducing the incidence of cervical cancer, the Kinmen County Health Bureau planned to implement a pilot human papillomavirus (HPV) vaccination program in 2007. The Bureau established a committee to promote public awareness, coordinate with the schools, arrange for the administration of the vaccine, establish a vaccination registry, and develop a plan for follow-up and assessment. Vaccination for female residents aged 16-18 began through a school-based program in 2008. A total of 1633 girls completed the vaccination protocol within 3 years, and vaccine uptake rates of over 90% were achieved by 2010. No serious adverse events were reported among those who were vaccinated. The experience gained from the Kinmen County HPV vaccination program has helped and will continue to help establish an operational model for similar programs throughout the country.