To reveal the relationship between tolerance to submergence and the distribution ranges of riparian tree species in the floodplains of the warm-temperate regions in Japan, we assessed the response and tolerance of currentyear seedlings of two Salix and three Ulmaceae species to submergence treatments for 1, 2, 4, and 8 weeks. We investigated shoot elongation, number of leaves, and survival rate of seedlings during the experiment, and biomass allocation was determined at the end of the experiment. Shoot elongation and leaf production of seedlings were suppressed in all the species during the submergence treatments. However, the seedlings of Salix chaenomeloides and S. pierotii elongated shoots rapidly and produced leaves after the treatments. All the underground biomass in these two species was larger than aboveground biomass. These results are considered as typical responses of floodtolerant species. In contrast, the underground biomass of Ulmaceae seedlings (Celtis sinensis var. japonica, Aphananthe aspera, and Ulmus parvifolia) decreased more rapidly than aboveground biomass during prolonged submergence. Furthermore, A. aspera seedlings also showed suppression of shoot elongation and leaf production after the treatments. Our results indicate that the three Ulmaceae species are less tolerant to submergence than the two Salix species. In conclusion, we suggest that submergence stress is one of the important factors determining the distribution of tree species in the floodplains of lowlands in the warmtemperate regions of Japan.