The cacti are one of the most celebrated radiations of succulent plants. There has been much speculation about their age, but progress in dating cactus origins has been hindered by the lack of fossil data for cacti or their close relatives. Using a hybrid phylogenomic approach, we estimated that the cactus lineage diverged from its closest relatives ≈35 million years ago (Ma). However, major diversification events in cacti were more recent, with most species-rich clades originating in the late Miocene, ≈10-5 Ma. Diversification rates of several cactus lineages rival other estimates of extremely rapid speciation in plants. Major cactus radiations were contemporaneous with those of South African ice plants and North American agaves, revealing a simultaneous diversification of several of the world's major succulent plant lineages across multiple continents. This short geological time period also harbored the majority of origins of C 4 photosynthesis and the global rise of C 4 grasslands. A global expansion of arid environments during this time could have provided new ecological opportunity for both succulent and C 4 plant syndromes. Alternatively, recent work has identified a substantial decline in atmospheric CO 2 ≈15-8 Ma, which would have strongly favored C 4 evolution and expansion of C 4 -dominated grasslands. Lowered atmospheric CO 2 would also substantially exacerbate plant water stress in marginally arid environments, providing preadapted succulent plants with a sharp advantage in a broader set of ecological conditions and promoting their rapid diversification across the landscape.climate change | paleobotany | CAM photosynthesis P lants are generally classified as succulent when they exhibit pronounced water storage in one or more organs. High degrees of succulence are most often associated with a suite of other characteristics that together confer survival in water-limited environments. This "succulent syndrome" usually includes a shallow root system that permits rapid uptake of unpredictable precipitation; a thick, waxy cuticle that prevents excessive water loss; and Crassulacean acid metabolism (CAM), an alternative photosynthetic pathway that allows plants to uptake atmospheric CO 2 at night when water loss is minimized (1). Although some 30 plant lineages have been classified as succulent, only a small subset of those are species-rich and ecologically important elements of arid and semiarid ecosystems worldwide. These lineages include the ice plants (Aizoaceae, ≈2,000 spp), the spurges (Euphorbia, ≈2,100 spp., ≈650 of which are succulent), the stonecrops (Crassulaceae, ≈1,400 spp.), the aloes (Aloe, ≈400 spp.), the agaves (Agave, ≈200 spp.), the stapeliads and asclepiads (Apocynaceae-Asclepiadoideae, ≈3,700 spp., ≈1,150 of which are succulent) and especially the cacti (Cactaceae, ≈1,850 spp.) (2).The cacti represent the most spectacular New World radiation of succulent plants. Most cacti exhibit a highly specialized life form, with extremely succulent, photosynthetic stems and leaves that have been mo...

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Transcriptomes are useful both for species-tree inference and for uncovering evolutionary complexity within lineages. Through analyses of gene-tree conflict and multiple methods of species-tree inference, we demonstrate that phylogenomic data can provide unparalleled insight into the evolutionary history of Caryophyllales. We also discuss a method for overcoming computational challenges associated with homolog clustering in large data sets.

Traditional classifications of the suborder Portulacineae recognize six families: Basellaceae, Cactaceae, Didiereaceae, Halophytaceae, Hectorellaceae, and Portulacaceae. However, phylogenetic analyses based on molecular sequence data indicate that the traditional family Portulacaceae is paraphyletic and consists of three distinct lineages that also include Cactaceae, Didiereaceae, and Hectorellaceae. We use sequence data from the chloroplast genes matK and ndhF representing 64 species of Portulacineae and outgroups to reconstruct their phylogenetic relationships with Bayesian and maximum parsimony inference methods. Evidence from these molecular phylogenetic analyses as well as from comparative morphological investigations allow us to propose a revised familial classification of the suborder Portulacineae. We recognize eight monophyletic families: We provide a synopsis for this revised family classification with an identification key mainly based on habit and fruit characters, and family diagnoses with information on distribution, taxonomic diversity, and a brief discussion on phylogenetics and classification.