Objective: To assess the obstacles faced by biomedical researchers in Jordan and the reasons behind the stagnation of health care research. Background: Health care research is essential for the advancement of medical care but faces obstacles that delay the completion of research projects, and the literature is still deficient, especially in developing countries. Methods: A cross-sectional survey was conducted of all academic staff of health care faculties at the University of Jordan who had been employed for five years or more and had at least one stagnant research project. Questionnaires were completed by the academic staff online using Google Forms after a face-to-face interview to explain the study process to them. Results: A total of 82 researchers with a mean age of 42.68 (±9.16) years were included most of whom (84.1%) had only one stagnant project. Of the 106 stagnant projects, 28.3% were in the basic sciences and 71.7% were in clinical research. Almost a third (29.5%) of the projects remained stagnant after reaching the publication stage. Most researchers (81.3%) identified lack of time and high workload as the most common personal barriers and 44.4% identified lack of funds and research incentives as the most common institutional barriers. Conclusions: Medical research is affected by different barriers including lack of time, high workload, lack of funds, and insufficient incentives for research. An institutional strategic plan is required to overcome those barriers and to improve medical research.