The SLCO1A2 influx transporter is located in the liver, intestine, brain and kidneys. A number of functional single nucleotide polymorphisms (SNPs) have been reported in the SLCO1A2 gene (including 516A>C and 38 T>C). The aim of this study was to determine if LPV is a substrate for SLCO1A2 in vitro and to assess whether these SNPs impact upon LPV plasma concentrations. MethodsSLCO1A2 was cloned (with Kozak sequence) into pBluescriptII-KSM, flanked by the 5' and 3' X. laevis β-globin UTR and cRNA was generated by in vitro transcription. SLCO1A2 or water-injected oocytes were incubated with estrone-3-sulphate ([3H]-E3S; 1 μM; 0.33 μCi/ml; positive control) or [3H]-LPV (1 μM, 0.33 μCi/ml). Statistical analyses were performed on log transformed data by a paired t-test (n = 4 experiments with at least six replicates). Archived plasma samples were available from patients (n = 400) who had previously undergone therapeutic drug monitoring (TDM). LPV peak (2-6 hr) and trough (10-14 hr) concentrations were available. The following exclusion criteria were applied; age <18 years, pregnancy, deranged LFTs and the use of rifamycins, anticonvulsants, acid-reducing agents or NNRTIs. SLCO1A2 516A>C and 38T>C were genotyped using real-time allelic discrimination and statistical analysis was performed by Mann Whitney. Summary of results SLCO1A2-injected oocytes had significantly higher E3Saccumulation compared to water-injected oocytes (0.51 ± 0.17 vs. 0.16 ± 0.04 (pmol/oocyte), p < 0.05) and significantly higher accumulation of LPV (4.30 ± 0.72 vs. 2.14 ± 0.43, p < 0.05). The allele frequencies of 516C and 38C were 2.5% and 5.8%, respectively. The median (range) Ctrough for 516 AA, AC and CC were 5,170 (818-22,432) 4,859 (2,008-14,273) and 5,609 (1,174-8,396) ng/mL, respectively (p > 0.05). The median (range) Ctrough for 38 TT, TC and CC were 5,432), 5,945) and 3,899 (2,815) ng/mL, respectively (p > 0.05). Also, no association with peak concentrations was observed. ConclusionThese data indicate that LPV is a substrate for SLCO1A2. However, SLCO1A2 516A>C and 38T>C did not influence plasma concentrations of LPV and does not therefore appear to be a major determinant of intersubject variability. These data must be interpreted with caution due to the limitations associated with a TDM cohort (i.e. selection bias and lack of ethnicity data). As with all pharmacogenetic data, the findings warrant confirmation in other cohorts.