Refinement of the population and radial dependence of the spherical atomic valence shell is introduced in a general crystallographic least-squares program. The radial dependence is described by an expansioncontraction parameter K, which, in the nine data sets tested, indicates contraction of positively and expansion of negatively charged atoms in agreement with theoretical concepts such as those incorporated in Slater's analytical rules for atomic orbitals. H atoms appear more contracted than concluded previously on the basis of a comparison of X-ray and neutron thermal parameters of sucrose. An average value of 1.40 for the radial contraction of H is used in structures for which no neutron thermal parameters are available. The resuiting net charges are used to calculate X-ray molecular dipole moments whose magnitude and direction are in good agreement with theoretical and other experimental results, though some differences may be expected because of matrix effects. Net molecular charges in the one-dimensional conductor TTF-TCNQ agree with results obtained earlier by direct integration of the charge density over the molecular volume. A charge transfer from Si to V in the superconducting alloy V3Si is also in agreement with earlier results.
The transition metal-doped boron clusters MB24− (M = Sc, Ti, V, and Cr) have endohedral borospherene structures, MB24− (M = Mn, Fe, and Co) have similar distorted four-ring tube structures, and NiB24− has a quasi-planar structure.
A theoretical study of geometrical structures, electronic properties, and spectral properties of single-atom transition metal-doped boron clusters MB24 (M = Sc, V, and Mn) is performed using the CALYPSO approach for the global minimum search, followed by density functional theory calculations. The global minima obtained for the VB24 and MnB24 clusters correspond to cage structures. Interestingly, the global minima obtained for the ScB24 cluster tend to a three-ring tubular structure. Population analyses and valence electron density analyses reveal that partial electrons on transition-metal atoms transfer to boron atoms. The localized orbital locator of MB24 (M = Sc, V, and Mn) indicates that the electron delocalization of ScB24 is stronger than that of VB24 and MnB24, and there is no obvious covalent bond between doped metals and B atoms. The spin density and spin population analyses reveal that MB24 (M = Sc, V, and Mn) have different spin characteristics which are expected to lead to interesting magnetic properties and potential applications in molecular devices. The calculated spectra indicate that MB24 (M = Sc, V, and Mn) has meaningful characteristic peaks that can be compared with future experimental values and provide a theoretical basis for the identification and confirmation of these single-atom transition metal-doped boron clusters. Our work enriches the database of geometrical structures of doped boron clusters and can provide an insight into new doped boron clusters.
A theoretical research of structural evolution, electronic properties, and photoelectron spectra of selenium-doped boron clusters SeBn0/− (n = 3–16) is performed using particle swarm optimization (CALYPSO) software in combination with density functional theory calculations. The lowest energy structures of SeBn0/− (n = 3–16) clusters tend to form quasi-planar or planar structures. Some selenium-doped boron clusters keep a skeleton of the corresponding pure boron clusters; however, the addition of a Se atom modified and improved some of the pure boron cluster structures. In particular, the Se atoms of SeB7−, SeB8−, SeB10−, and SeB12− are connected to the pure quasi-planar B7−, B8−, B10−, and B12− clusters, which leads to planar SeB7−, SeB8−, SeB10−, and SeB12−, respectively. Interestingly, the lowest energy structure of SeB9− is a three-dimensional mushroom-shaped structure, and the SeB9− cluster displays the largest HOMO–LUMO gap of 5.08 eV, which shows the superior chemical stability. Adaptive natural density partitioning (AdNDP) bonding analysis reveals that SeB8 is doubly aromatic, with 6 delocalized π electrons and 6 delocalized σ electrons, whereas SeB9− is doubly antiaromatic, with 4 delocalized π electrons and 12 delocalized σ electrons. Similarly, quasi-planar SeB12 is doubly aromatic, with 6 delocalized π electrons and 14 delocalized σ electrons. The electron localization function (ELF) analysis shows that SeBn0/− (n = 3–16) clusters have different local electron delocalization and whole electron delocalization effects. The simulated photoelectron spectra of SeBn− (n = 3–16) have different characteristic bands that can identify and confirm SeBn− (n = 3–16) combined with future experimental photoelectron spectra. Our research enriches the geometrical structures of small doped boron clusters and can offer insight for boron-based nanomaterials.
Here, the ground-state structures, electronic structures, polarizability, and spectral properties of metal-free phthalocyanine (H 2 Pc) under different external electric fields (EEFs) are investigated. The results show that EEF has an ultrastrong regulation effect on various aspects of H 2 Pc; the geometric structures, electronic properties, polarizability, and spectral properties are strongly sensitive to the EEF. In particular, an EEF of 0.025 a.u. is an important control point: an EEF of 0.025 a.u. will bend the benzene ring subunits to the positive and negative x directions of the planar molecule. Flipping the EEF from positive (0.025 a.u.) to negative (−0.025 a.u.) flips also the bending direction of benzene ring subunits. The H 2 Pc shows different dipole moments projecting an opposite direction along the x direction (−84 and 84 Debye for EEFs of −0.025 and 0.025 a.u., respectively) under negative and positive EEF, revealing a significant dipole moment transformation. Furthermore, when the EEF is removed, the molecule can be restored to the planar structure. The transformation of the H 2 Pc structure can be induced by the EEF, which has potential applications in the molecular devices such as molecular switches or molecular forceps. EEF lowers total energy and reduces highest occupied molecular orbital−lowest unoccupied molecular orbital (HOMO−LUMO) gap; especially, an EEF of 0.025 a.u. can reduce the HOMO−LUMO gap from 2.1 eV (in the absence of EEF) to 0.37 eV, and thus, it can enhance the molecular conductivity. The first hyperpolarizability of H 2 Pc is 0 in the absence of EEF; remarkably, an EEF of 0.025 a.u. can enhance the first hyperpolarizability up to 15,578 a.u. Therefore, H 2 Pc under the EEF could be introduced as a promising innovative nonlinear optical (NLO) nanomaterial such as NLO switches. The strong EEF (0.025 a.u.) causes a large number of new absorption peaks in IR and Raman spectra and causes the redshift of electronic absorption spectra. The changes of EEF can be used to regulate the structure transformation and properties of H 2 Pc, which can promote the application of H 2 Pc in nanometer fields such as molecular devices.
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