Abstract:The aim of our project was to compare gel electrophoretic separation methods of the RAPD wheat products. We used 9 genotypes of common wheat (Triticum aestivum L.) in the studyand the tested ability of agarose and polyacrylamidic gels to separate RAPD markers. We found that polyacrylamidic gels coloured according to C������-A������ and G������� (1994) are more suitable for evaluation of the variability in the markers examined. Agarose electrophoresis is more suitable for assessing the variability of expressive RAPD products; it is also less time-consuming.