2024
DOI: 10.1101/2024.11.27.625779
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A Comparative Review of Deep Learning Methods for RNA Tertiary Structure Prediction

Ivona Martinović,
Tin Vlašić,
Yang Li
et al.

Abstract: Several deep learning-based tools for RNA 3D structure prediction have recently emerged, including DRfold, DeepFoldRNA, RhoFold, RoseTTAFoldNA, trRosettaRNA, and AlphaFold3. In this study, we systematically evaluate these six models on three datasets: RNA Puzzles, CASP15 RNA targets, and a newly generated large dataset of sequentially distinct RNAs, which serves as a benchmark for generalization capabilities. To ensure a robust evaluation, we also introduce a fourth, more stringent dataset that contains both s… Show more

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