A Markov Random Field orientation prior for electronic cleansing in CT Colonography

Abstract

Tagging of the bowel content with an oral contrast facilitates CT Colonography with limited bowel preparation. Electronic colon cleansing (ECC) reconstructs the colon lumen, devoid of feces from a CT scan acquired with fecal fluid tagging. A popular method to estimate the stool composition in an image (with the purpose of removing it) is the well-established Expectation Maximization (EM) method. The tagged fluid residue appears as a contrast enhanced region with a largely horizontal interface with air above it. One of the issues is the partial volume (PV) effect that creates voxels with attenuations similar to that of the colon wall at the boundary of air and tagged fluid. We present here, a novel orientation prior formulated as a Markov Random Field that is included as part of the EM tissue segmentation framework to mitigate this PV effect at the air and tagged fluid layer. We show quantitative results on a simple synthetic dataset and qualitative results on patient data that highlight improvements due to the inclusion of the orientation prior.