A Molecular Communication Scheme to Estimate the State of Biochemical Processes on a Lab-on-a-Chip

Akdeniz, Bayram Cevdet; Egan, Malcolm

doi:10.1145/3416006.3431272

Cited by 3 publications

(4 citation statements)

References 31 publications

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“…For channels governed by stochastic models, how to tailor the channel to an engineering application has not been widely investigated. One exception is the recent work in [117,118], where channel design for the purpose of spectroscopy was investigated.…”

Section: Distributed Spectroscopymentioning

confidence: 99%

“…One approach to performing state estimation of a biochemical process in a distributed fashion has recently been proposed in [117]. This approach is illustrated in Fig.…”

Section: Distributed Spectroscopymentioning

confidence: 99%

“…8, where a biochemical process under observation contained in a chamber, connected to spectroscopy chamber-where the quantity of a given chemical species can be directly observed-via a microfluidic channel. [117,118].…”

Section: Distributed Spectroscopymentioning

confidence: 99%

See 2 more Smart Citations

Stochastic reaction and diffusion systems in molecular communications: Recent results and open problems

Egan¹,

Akdeniz²,

Tang³

2022

Digital Signal Processing

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Chemical reactions and diffusion are two basic mechanisms governing the dynamics of molecules in a fluid.As such, they play a critical role in molecular communication for channel modeling, design of detection rules, implementation of molecular circuits for computation, and modeling interactions with external biochemical systems. For finite numbers of information-carrying molecules, stochastic models naturally arise with the simplest example given by the Wiener process, often known as Brownian motion. Nevertheless, the Wiener process fails to be accurate when external forces, friction, and chemical reactions are present. Recently, there have been several contributions that tailor molecular communication systems to these more challenging channel conditions. In this paper, we first overview a general family of stochastic models of reaction and diffusion systems, including both Langevin diffusion and the reaction-diffusion master equation. These models form a basis for the use of these models as molecular communication channels, from which modulation and detection schemes can be developed. We survey recent results on the design of these schemes, with a focus on a recently developed approach which is robust to a wide range of channel models, known as equilibrium signaling. We then turn to the implementation of these detection schemes and related parameter estimation problems via stochastic molecular circuits, based on stochastic chemical reaction networks. Finally, interactions between molecular communication systems and stochastic biological systems as well as open problems are discussed.Our overarching goal is to highlight how the consideration of general stochastic models of reaction and diffusion can be utilized in order to widen the application of molecular communications both within engineered systems, and also as motivation for advances in the mathematical characterization of these models.

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Section: Distributed Spectroscopymentioning

confidence: 99%

“…One approach to performing state estimation of a biochemical process in a distributed fashion has recently been proposed in [117]. This approach is illustrated in Fig.…”

Section: Distributed Spectroscopymentioning

confidence: 99%

See 1 more Smart Citation

Stochastic reaction and diffusion systems in molecular communications: Recent results and open problems

Egan¹,

Akdeniz²,

Tang³

2022

Digital Signal Processing

Self Cite

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“…c. Lab on a chip This is an upcoming technological endeavour wherein it assimilates synthesis operations and biochemical analysis such as blood diagnosis and cellular analysis onto a small sized chip. In its present implementation, microfluidics controlled by a syringe are used as a transport medium of molecular reagents [31]. d. Monitoring of health conditions MC not only allows biological but also artificial sensors to interact with one another.…”

Section: Applications Of MC (Molecular Communication) a Molecular Com...mentioning

confidence: 99%

New Insights on Molecular Communication in Nano Communication Networks and their Applications

Koshy¹,

Jeerapan²,

Manjunatha³

2022

ECS Trans.

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The advancement in nanotechnology has carved out a way to establish a powerful base to fall on for implementation of nanoscale machines having the capability to carry out significant yet trivial tasks. This impetus has led the researchers to continually bring up various solutions for implementing and executing nanoscale communications taking into consideration of biological as well as electromagnetic communication. The primary aims are expanding the abilities of nanoscale devices to integrated multiple composite tasks by reciprocated coordination, which can be carried out through this communication type. This paper describes the current research developments in nano communication networks, focusing on molecular communication (MC). MC makes use of molecules as an information transporter between nanoscale machines. Molecules help in enciphering messages to send between a sender and a receiver. MC has, thereby, become an inseparable part of the IoNT (Internet of Nano-Things) as a communication model among nanoscale machines. This paper also gives a description of the design of MC systems and various channelling models used to address the various challenges and opportunities in this new upcoming and developing field. In addition, this review article is also inclusive of an investigative survey on the recent developments in this field.

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Intelligent Auxiliary System for Sports Public Service Information Platform Based on Communication and Computing Methods

Zhu¹,

Chu

2022

Proceedings of Third International Conference on Communication, Computing and Electronics Systems

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A Molecular Communication Scheme to Estimate the State of Biochemical Processes on a Lab-on-a-Chip

Cited by 3 publications

References 31 publications

Stochastic reaction and diffusion systems in molecular communications: Recent results and open problems

Stochastic reaction and diffusion systems in molecular communications: Recent results and open problems

New Insights on Molecular Communication in Nano Communication Networks and their Applications

Intelligent Auxiliary System for Sports Public Service Information Platform Based on Communication and Computing Methods

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