Wave propagation and run-up in U-shaped channel bays are studied here in the framework of the quasi-1D Saint-Venant equations. Our approach is numerical, using the momentum conserving staggered-grid (MCS) scheme, as a consistent approximation of the Saint-Venant equations. We carried out simulations regarding wave focusing and run-ups in U-shaped bays. We obtained good agreement with the existing analytical results on several aspects: the moving shoreline, wave shoaling, and run-up heights. Our findings also confirm that the run-up height is significantly higher in the parabolic bay than on a plane beach. This assessment shows the merit of the MCS scheme in describing wave focusing and run-up in U-shaped bays. Moreover, the MCS scheme is also efficient because it is based on the quasi-1D Saint-Venant equations.