Abstract:The present study is an attempt to apply the concept of plant and pollen indicators to habitat conditions in different soil strata at archaeological site (Lake Qarun). It revealed a great palaeoenvironmental information's about habitat changing of Lake Qarun from a humid and wet conditions during the Hellenic Period to reed swampy early Roman, to Nile Flooding middle Roman, to mesophytic habitats Late Roman, also changing to halophytic and salt marshes with presence of Chenopodiaceae at recent time. Using indicator plants and their remains i.e. pollen grains and spores, palynological studies of different soil strata revealed that, presence of 13 pollen and spore types e.g. Lycopodium, Typhaceae type, Juncaceae, Poaceae, Cyperaceae, Caryophyllaceae, Chenopodiaceae, Nymphaeaceae, Fabaceae, Asteraceae, Tamaricaceae,Onagraceae and Lamiaceae. The data obtained were valuable in reconstruct past vegetation and habitats conditions of Lake Qarun during Helleno Roman period.