Blastocystis has a widespread distribution in a variety of animals, which is a potential source of infection for humans. However, the contribution of zoonotic transmission remains unclear due to the absence of molecular proof of these organisms being identical to those found in humans. We report herein the similar subgroup of Blastocystis isolates from humans, pigs, and a horse using a restriction fragment length polymorphism (RFLP) analysis of partial small-subunit ribosomal DNA (ssu rDNA). Additionally, sequence and phylogenic analysis of partial ssu rDNA of Blastocystis from a human, a pig, and a horse sharing a common subgroup shows that Blastocystis isolates from a pig and a horse were monophyletic and closely related to B. hominis, with 92 to 94% identity. These results suggest the possibility of zoonotic potential of Blastocystis.Blastocystis hominis is one of the most common intestinal protozoa found in humans. This organism has been recognized as a causative agent of diarrhea both in immunocompromised and immunocompetent hosts in several studies (6,8). However, its role in human disease is still intensely debated since most cases are asymptomatic (2,18,21,23). It has been reported from both developed and developing countries, with a high prevalence in tropical areas, ranging between 30 and 50% (2, 15, 21). Our knowledge of this organism in several aspects, including its transmission, is still unclear. Zoonotic transmission of B. hominis has been speculated since epidemiological studies suggested a linkage between close contact with animals and blastocystosis in humans (8,17). In addition, Blastocystislike organisms were detected in a wide range of animals (1, 4, 9, 16). However, there was no conclusive evidence demonstrating animal-to-human transmission and zoonotic potential of B. hominis. One of the difficulties is the identification of these organisms since infection with Blastocystis has been diagnosed on the basis of morphology, host of origin, and in vitro culture characteristics (4). Although the morphology of Blastocystis detected in some animals was similar to those found in humans, only few animal isolates of Blastocystis were genetically proven to be identical to human isolates (7,25). Using a restriction fragment length polymorphism (RFLP) analysis of small-subunit ribosomal DNA (ssu rDNA), Clark identified a ribodeme of Blastocystis isolated from guinea pigs similar to that found in B. hominis (7). Yoshikawa et al. also showed that the pattern of random amplified polymorphic DNA in Blastocystis isolated from a chicken was similar to that displayed by B. hominis isolate HE87-1 (25). These observations, however, were limited and lack epidemiological data to support the association. Therefore, to determine the zoonotic potential of B. hominis, we conducted a study of genotypic characterization using RFLP analysis of partial ssu rDNAs of Blastocystis isolated from humans compared to those isolated from animals. ssu rDNAs of Blastocystis isolated from a human, a pig, and a horse were also partia...