“…35 Whereas others have reported differences in gene expression along the axis of the Achilles tendon with proximal regions enriched for tendon and nerve cell markers and distal regions enriched for extracellular matrix remodeling, immune cell regulation, and cartilage-/bone-related genes. 36 In addition to bulk RNA-seq analyses, which examine the transcriptomes of pooled cell populations or whole tissues, single-cell (sc) RNA-seq has permitted unprecedented resolution of cell diversity and tissue composition. As bulk RNA-seq combines transcripts from all cells in the tissue, differential gene expression between samples (e.g., between control and mutant tendons) could, therefore, result from changes in the composition of the cells in the tissue or to changes in the gene expression within the same cells in that tissue, confounding some interpretations of gene expression changes and requiring further validation.…”