This article presents the results of an integrated interpretation of measurements made using Audio-Magnetotellurics and Seismic Reflection geophysical methods. The obtained results were used to build an integrated geophysical model of shallow subsurface cover consisting of Cenozoic deposits, which then formed the basis for a detailed lithological and tectonic interpretation of deeper Mesozoic sediments. Such shallow covers, consisting mainly of glacial Pleistocene deposits, are typical for central and northern Poland. This investigation concentrated on delineating the accurate geometry of Obrzycko Cenozoic graben structure filled with loose deposits, as it was of great importance to the acquisition, processing and interpretation of seismic data that was to reveal the tectonic structure of the Cretaceous and Jurassic sediments which underly the study area. Previously, some problems with estimation of seismic static corrections over similar grabens filled with more recent, low-velocity deposits were encountered. Therefore, a novel approach to estimating the exact thickness of such shallow cover consisting of low-velocity deposits was applied in the presented investigation. The study shows that some alternative geophysical data sets (such as magnetotellurics) can be used to significantly improve the imaging of geological structure in areas where seismic data are very distorted or too noisy to be used alone