In this paper, a methodology for the integral energy performance characterization (thermal, daylighting and electrical behavior) of semi-transparent photovoltaic modules (STPV) under real operation conditions is presented. An outdoor testing facility to analyze simultaneously thermal, luminous and electrical performance of the devices has been designed, constructed and validated. The system, composed of three independent measurement subsystems, has been operated in Madrid with four prototypes of a-Si STPV modules, each one corresponding to a specific degree of transparency. The extensive experimental campaign, continued for a whole year rotating the modules under test, has validated the reliability of the testing facility under varying environmental conditions. The thermal analyses show that both the solar protection and insulating properties of the laminated prototypes are lower than those achieved by a reference glazing whose characteristics are in accordance with the Spanish Technical Building Code. Daylighting analysis shows that STPV elements have an important lighting energy saving potential that could be exploited through their integration with strategies focused to reduce illuminance values in sunny conditions. Finally, the electrical tests show that the degree of transparency is not the most determining factor that affects the conversion efficiency.