Within this study, a novel highthroughput peptide array technology enabled the correlation between the clinical phenotype and the antibody response against linear epitopes of the P. falciparum proteome. Peptides from twelve known vaccine candidates and a bioinformatical selection were screened. Strong reactivities to epitopes derived from known vaccine candidates as well as new immunogenic proteins/epitopes were identified, which may serve as vaccine targets and new biomarkers.