The rapid development of wearable electronics highlights the urgence to develop the portable energy harvester with excellent output performance, comfortability, and sustainability. This work designs an electromagnetic walking energy harvester based on water turbine that can be embedded in shoes with good comfortability. Its working principle is that the walking generated pressure energy drives a miniature hydraulic turbine to output electricity. Experimental results show that an average power of 300 and 180 mW can be produced at heel and toe, respectively, when a man of 80 kg walks at a speed of 1.8 m s−1. This power output exceeds the piezoelectric, triboelectric, and electromagnetic walking energy harvesters reported in the past. Additionally, the simpler structure endows it better comfortability as compared with the electrostatic capacitances. Computational fluid dynamics simulations provide a further insight that the efficiency of turbine can reach 13.5% by optimizing parameters of blade number and outlet flow ratio. Finally, user real-time positioning and trajectory recording are successfully demonstrated via a wearable GPS means Global Positioning System module powered by the harvester. Due to the combination of high output performance, simple structure and low discomfort, the water turbine based walking energy harvester will provide a wide application potential in wearable devices.