“…We then carried out RNA-Seq analyses to determine transcriptomic changes in microglia at multiple time-points after the two SCI severities (Tables S1, S3). We found an increased expression of microglia and monocyte markers (including Arg1, Ccr2 , and Emr1 ) (Mildner et al, 2007; Gautier et al, 2012; Zhang et al, 2014; Greenhalgh et al, 2016) that were independent of lesion severity (Figure S3A, Table S3). In all samples we detected only very low expression and no lesion-induced change in neuronal ( Tubb3, Isl1, Syt1 and Gabra1 ), astrocytic ( Aldh1l1, Tnc and Aqp4 ) or oligodendrocyte ( Sox10, Mag, Mog, Mobp, Cx47 , and Cldn11 ) transcripts, further confirming the purity of our isolation procedure (Table S3).…”